Wednesday, 10 December 2014

Periodic Table lagi??

Salam 1Kimia semua,

Periodic table sangat penting apabila kita belajar kimia. Kebanyakan topik akan menggunakan Periodic table dalam pengiraan, penentuan saiz atomic, penentuan takat didih dan takat lebur dan sebagainya.

Di sini saya sertakan Periodic Table yang anda boleh gunakan serta video yang menarik dan comel. hehehe. 


ehhh apa ini? okayy tengok gambar bawah pulak.
macam faham sikit-sikit. okayy tengok gambar bawah ni pula.

haaa yang ni baru faham. Nak lagi faham? jom tengok video ni.


Tuesday, 9 December 2014

GREEN CHEMISTRY IN PHARMACEUTICAL INDUSTRY

1.1       Introduction
The pharmaceutical industry is a multi-billion dollar operation in which companies compete with each other to bring new or more effective drugs to consumers. Generic drug companies use established drug patents to mass produce their own versions of current drugs.
While most of us know this, we may not know much about the chemistry behind the pharmaceutical industry. In the push to produce drugs, chemical formulas have been developed through the years that yield a little bit of drug while producing a lot of wasteful by-products in the chemical process. When generic companies start using these same chemical formulas, they leave behind even more waste because of the scale of production.

2.1       Green Chemistry
Pharmaceutical companies of all types have started thinking more about green chemistry. Green chemistry is the design of chemical products and processes that reduce or eliminate the use or generation of hazardous substances in all steps of particular synthesis or process. Green chemistry applies across the life cycle of a chemical product, including its design, manufacture, use, and ultimate disposal. Green chemistry is also known as sustainable chemistry.
Green chemistry prevents pollution at the molecular level. It is a philosophy that applies to all areas of chemistry, not a single discipline of chemistry. It also applies innovative scientific solutions to real-world environmental problems. This results in source reduction because it prevents the generation of pollution. It can reduce the negative impacts of chemical products and processes on human health and the environment. Green chemistry lessens and sometimes eliminates hazard from existing products and processes. It also designs chemical products and processes to reduce their intrinsic hazards.
Chemists and medicinal scientists can greatly reduce the risk to human health and the environment by following all the valuable principles of green chemistry. The most simple and direct way to apply green chemistry in pharmaceuticals is to utilize eco-friendly, non-hazardous, reproducible and efficient solvents and catalysts in synthesis of drug molecules, drug intermediates and in researches involving synthetic chemistry. Microwave synthesis is also an important tool of green chemistry by being an energy efficient process.
During the twentieth century, chemistry changed the way people lived. And the greatest perceived benefits came from pharmaceutical industries with development of organic medicinal molecules. Pharmaceutical chemistry encompasses major chemicals, reagents, solvents, catalysts and almost all type of organic reactions for synthesis of active pharmaceutical molecules. Herein, many chemicals and chemical processes are very hazardous, toxic and may have adverse effects on the environment and on human health. Industries associated with pharmaceuticals and fine chemicals are employing much more complex chemistry and produce relatively much more waste, which is not at all suitable for environment and nature.
During the early 1990's the US Environmental Protection Agency (EPA) coined the phrase Green Chemistry to promote innovative chemical technologies that reduce or eliminate the use or generation of hazardous substances in the design, manufacture and use of chemical products. Green chemistry is designed to reduce or eliminate negative environmental impacts such that the use and production of chemicals may involve reduced waste products, non-toxic components, and improved efficiency. Green chemistry is not a particular set of technologies, but rather an emphasis on the design of chemical products and processes. This approach offers environmentally beneficial alternatives to more hazardous chemicals and processes, and thus promotes pollution prevention.
2.1.1 Principles of Green Chemistry
Green chemistry is a highly effective approach to pollution prevention as it applies innovative scientific solutions to real-world environmental situations. The following 12 principles of Green Chemistry provide a way for chemists to implement green chemistry.
The first is prevention of waste. It is better to prevent waste than to treat or clean up waste after it has been created.  Second is atom economy. Synthetic methods should be designed to maximize the incorporation of all materials used in the process into the final product. Third is less hazardous chemical syntheses which is synthetic methods should be designed, wherever practicable, to use and generate substances that possess little or no toxicity to human health and the environment. Fourth is designing safer chemicals. Chemical products should be designed to achieve their desired function while minimizing their toxicity.
The fifth principle is safer solvents and auxiliaries. Unnecessary use of auxiliary substances (e.g., solvents, separation agents, etc.) should be avoided wherever possible and made innocuous when used. The sixth principle is design for energy efficiency. Energy requirements of chemical processes should be recognized for their environmental and economic impacts and should be minimized. If possible, synthetic methods should be conducted at ambient temperature and pressure. The seventh principle is use of renewable feed stocks. Whenever technically and economically practicable, raw material or feedstock should be renewable rather than depleting it.
The eighth principle of green chemistry is reduce derivatives. Unnecessary derivatization (use of blocking groups, protection/ deprotection, temporary modification of physical/chemical processes) should be minimized or avoided if possible, because such steps require additional reagents and can generate waste. The ninth principle is catalysis which catalytic reagents (as selective as possible) are superior to stoichiometric reagents. The tenth principle is design for degradation. Chemical products should be designed so that at the end of their function they break down into innocuous degradation products and do not persist in the environment.
The eleventh principle is real-time analysis for pollution prevention. Analytical methodologies need to be further developed to allow for real-time, in-process monitoring and control, prior to the formation of hazardous substances. The last principle of green chemistry is inherently safer chemistry for accident. Prevention substances and the form of a substance used in a chemical process should be chosen so as to minimize the potential of chemical accidents, including releases, explosions, and fires.

3.1       Future Trends for Green Chemistry in Pharmaceutical Industry
This is what will happen in this arena over the next 20 years. The pharmaceutical industry has been accused in the past of being ‘ ungreen ’ , but a reasoned observation will show that many of the ideas and much of the drive to push for changes in synthetic methodology, green chemistry, and engineering have come from certain groups and companies within the pharmaceutical industry.
            The publication in 1992 of a table comparing E factors of various industry segments raised awareness of the high levels of waste generation in the pharmaceutical industry. Initial efforts to explain this state of affairs highlighted as complex products with demanding high quality standards, complexity of the regulatory process and its requirements which can slow down process changes and relatively low-volume products compared with other industry segments.
However, there was a realization that the various industry segments were actually in the order that would be expected, that is, pharmaceutical industry in general should produce more waste per kilo that the fine chemical industry , which in turn should produce more waste than the bulk chemical industry because of issues of molecular complexity and synthesis length. The target for each industry segment should be improved and, ideally, move up to the next level.
            It is clear that if these aspirational E factor targets are to be met, then improvements are desirable in many areas of chemistry, including waste minimization in medicinal chemistry, greener synthetic methods in primary manufacture, increased use of chemo and biocatalysis, and more collaborative efforts between pharmaceutical companies. These areas are all discussed in the remainder of this chapter.

3.1.1    Waste Minimization in Drug Discovery
Green Chemistry in the pharmaceutical industry first flourished in chemical development or process research departments. However, in the last few years there has been a back integration of Green Chemistry into medicinal chemistry itself. This is not without its challenges, as the modern practice of drug discovery relies heavily on speed of execution, which in turn relies on robust methodologies emphasizing broad applicability and reliability rather than environmental impact. In a large pharmaceutical company only about 5% of the chemical waste is produced in its drug discovery operations, but the advantage of greening these small - scale operations is that this improved chemistry will then be available for the scaling up of the chemistry as the drug moves through the development process. In 2004 Pfizer started an influential program to reduce its use of chlorinated solvents with initial focus on dichloromethane due to its relatively high volume use in medicinal chemistry.
In 2008 the program was extended to include chloroform usage. Some research chemistry sites had completely eliminated the use of chloroform at this time, but two sites continued to have high usage. An intensive education program was put in place by the Pfizer Green Chemistry Network leading to a dramatic reduction in chloroform usage during 2008. One of the benefits of this type of change is that once the education program has been put in place and a change in behaviour has been made, the company then receives the benefit of those behavioural changes ever afterwards. In the view of the three editors of this book, dichloromethane is an essential solvent in the drug discovery process but needs to be used responsibly, and its use should be minimized. In contrast, we look forward to the day when chloroform disappears completely from the modern drug discovery laboratory.
            A similar picture is emerging from some medicinal chemistry groups in Astra- Zeneca (AZ). Opportunities for improving environmental performance are often identified using lean sigma principles. Often highlighted is the use of large amounts of undesirable solvents like n - hexane and dichloromethane in the separation of mixtures and purification rather than in reactions. Initiatives that are under way include replacement of n - hexane with isohexane or heptane (both of which are significantly less toxic), eliminating the use of solvents such as carbon tetrachloride and chloroform, and minimizing the use of dichloromethane. Often this has involved moving away from silica as the traditional stationary phase in column chromatography. The goal is to move toward greener solvents without compromising on speed, quality, and delivery of drug development projects.
            Other examples of greener technology being adopted by medicinal chemistry are the use of supercritical CO 2 chromatography in place of traditional normal and reverse phase chromatography, especially in the analysis and preparative separation of enantiomers. A move towards automation and flow chemistry also offers both green and business benefits, such as increased speed of materials delivery and safe access to chemistries considered too unsafe to use in traditional batch mode in a standard synthetic organic chemistry laboratory. Another example of good practice widely adopted within AZ medicinal chemistry groups to minimize materials consumption is the use of bar coding and electronic tracking of laboratory chemicals. This maximizes the use of any chemical ordered, and, if used correctly, minimizes chemical inventory. Another initiative within medicinal (and process) chemistry groups focuses on saving energy by optimizing the use of fume hoods – often the biggest consumers of energy in an R & D establishment.

3.1.2    Greener Synthetic Methods in Primary Manufacturing
The case histories in this text provide vivid examples of how much has been achieved in the past decade with the ‘greening’ of syntheses in the pharmaceutical industry. However, two recent surveys highlighted the fact that great scope for future work remains, and presented fascinating insights into the types of reaction carried out during drug development programs. A Pfizer survey examined the reactions carried out over a 17 - year period in a single pilot plant, providing a view of the changes over that timescale, while a study from the process chemistry groups of AZ, GSK, and Pfizer gave a snapshot of the chemistry used to synthesize 128 active pharmaceutical ingredient s (API s). Both of these surveys revealed the widespread use of both atom inefficient functional group transformations and older stoichiometric synthetic methods such as Friedel - Crafts acylations, halogenations, and metal hydride reductions.
The principles of Green Chemistry are currently most often applied to the redesign of API processes late in the development timeline or even post regulatory approval. Ideally, the principles of Green Chemistry should be incorporated into API manufacturing process design as early as possible in development. As the vast majority of APIs for patent - expired products are manufactured using processes developed without green chemical insights, the development of green processes for drugs manufactured by generic companies represents a great opportunity for innovation.

3.1.3    Alternative Solvents in the Pharmaceutical Industry
Solvents represent the biggest contributor to the life cycle impact of pharmaceutical agents and the potential for harm to the environment during the manufacturing process. Data from the Swedish regulator, KEMI, suggest that global solvent demand is growing by 2% per year, but the use of chlorinated and hydrocarbon solvents is dropping – in the case of certain chlorinated materials, very rapidly. This is partly due to legislation and partly due to green chemistry initiatives (voluntary restraint). Most pharmaceutical companies now have solvent reduction initiatives that are focused on developing more efficient processes (synthetic sequences) that involve less solvent use, more solvent recovery, and a rational choice of solvents to minimize any environmental impact. Over the past 30 years or so, a number of ‘greener’ alternatives to volatile solvents have been proposed.
3.1.3.1 Water
Water is cheap, relatively abundant in many part of the world, safe, and, when pure, environmentally benign. It is also true that some reactions show unusual selectivity and/or rate enhancements when run in, or more accurately, on water. However, a closer examination of many reactions ‘in’ water reveals that in fact one or more liquid reagents have been used in large excess, so they are in fact biphasic reactions. There is also a misguided perception that water, after use as a reaction medium, can be ‘poured down the drain’. On an industrial scale, there can be a considerable cost and environmental burden associated with remediation of waste water streams contaminated with solvents and organic and metal residues.
One not obvious advantage of water is the use of water/detergent mixtures to clean chemical reactors/plant. Preparation of chemicals to GMP standard requires extensive and rigorous cleaning protocols. In a production plant, up to 30% of total solvent inventory is utilized in cleaning. If water/detergent cleaning can be used, this can save up to 90% of the solvent used for cleaning.

3.1.3.2 Ionic Liquids (ILs)
Over the past ten years, ILs have moved out of the realm of academic study and are being used in a diverse range of industrial processes. It is true to say that the application of ILs in the synthesis of pharmaceuticals and fine chemicals has been hampered by much ‘ green wash ’ and focus on single - issue sustainability claims such as that ILs are better than all other solvents because they have essentially no vapour pressure and are not classified as volatile organic compound s (VOC s). Other factors limiting take-up have been the lack of ecotoxicity and life cycle impact, cost, and recycle or disposal procedures at end of life. For scientists engaged in route design and manufacture of pharmaceuticals it has been clear for a long time that a process that ran efficiently in ethanol or ethyl acetate would never be improved in an environmental or commercial sense by replacing such solvents with an IL. This has somewhat detracted from the search for areas in which the application of ILs could impart real benefits to the chemistry and process.

3.1.3.3 Fluorous Solvents
High - molecular - weight polyfluorinated materials used in ‘ fluorous phase ’ techniques have poor life cycle impacts, and the high environmental impact of heavily fluorinated materials is now becoming apparent, so it is unlikely that this technology will have much impact on greening pharmaceutical manufacture. Of course fluorous technologies may, however, be of interest and use to the medicinal chemist working on a small scale to facilitate the rapid separation of catalysts from products.

3.1.3.4 Molecular Solvents from Renewable Sources
A number of solvent - like materials can be derived from renewable bio resources, but these tend to be more highly oxygenated than conventional solvents, and this has several ramifications. They are not suitable for wide ranges of chemical reactions because of their higher reactivity and viscosity, and higher boiling points can add an energy penalty in their use and recovery. Nevertheless, some are displacing solvents commonly used in synthesis. 2-Methyltetrahydrofuran has many favourable properties that make it a good solvent for organic synthesis, and, being derived from agricultural waste products (C - 5 sugars), it has a much better life cycle impact than tetrahydrofuran, which is derived from oil.
Of course, a number of solvents in common use in the chemical industry, such as ethanol, acetic acid, and ethyl acetate, can be derived from either bio or oil raw materials. The debate rages over the life cycle impact of bio versus fossil fuel ethanol. A further complication in this area is the societal question of corn versus lignocellulosic ethanol, and indeed the use of any food crop, arable land, or fertilizers to provide solvents or other bio renewable consumer products in place of food products.

3.1.3.5 Solid - Phase Reactions
A range of reactions have been reported which take place between two solids under the influence of mechanical agitation such as ball milling. A reasonably large range of reaction types has been reported. Concerns over homogeneity and reproducibility at scale plus process safety aspects of the control of exothermic reactions may mean that this technology could only be of interest in a very limited number of cases.

3.1.3.6 Obstacles to Change
We all want to become more sustainable and ‘green’, so why has there not been a great rush into these ‘greener’ alternatives? For a number of scientific and business reasons, progress and change in this area will be cautious and measured. Some have been touched on in earlier chapters but are worth recapping here.
First, lack of both environmental and mammalian toxicity data on new solvent systems. This becomes much more of a problem when solvents are used toward the end of a synthetic route and may contaminate the API. Inevitably there will be no regulatory guidance from the International Conference on Harmonization (ICH) on permissible levels in API. This represents a big regulatory barrier to making any change to existing registered processes or being the first to use a novel solvent in a final stage or API crystallization. Mammalian toxicity data is prohibitively expensive for most solvent manufacturers to obtain for new solvents.
Cost is also one of the problems. Governments, healthcare providers, and generic competition are putting pressure on ethical pharmaceutical suppliers to reduce the cost of medicines. Solvents that are produced on a small scale for niche markets will probably be expensive. While the production of pharmaceuticals is currently solvent intensive, the pharmaceutical industry is some way off being the biggest user of solvents. Historically, new solvents being adopted by the pharmaceutical industry that are available in bulk at reasonable cost have not been designed for organic synthesis, but have been developed for much bigger markets where economies of scale reduce manufacturing costs. An excellent example is provided by petroleum octane enhancers such as t - butyl methyl ether and 2-methyltetrahydrofuran. Security of supply which sourcing a novel solvent from a single supplier represents a high degree of risk for a launched product.

4.1       Conclusion
The pharmaceutical industry has made a major contribution to both the life expectancy and the quality of life of the human population, but it is clear that these contributions must be made without major detriment to the environment. In this book we have tried to capture some of the major achievements in moving to a greener pharmaceutical industry, and in general the performance to date has been good. However, there are many challenges and opportunities that remain outstanding. In our view the scope for innovation and improvement remains as wide as ever.

Referrences

1.       Marton, J. (2013) Green Chemistry in Generic Pharmaceutical Industry. retrieved from https://www.tamuk.edu/events/2013/04/green_chemistry.html
2.       Sheldon, R. (2010) Introduction to Green Chemistry, Organic Synthesis and Pharmaceuticals. Retrieved from http://www.wiley-vch.de/books/sample/3527324186_c01.pdf
3.       Smita Talaviya & Falguni Majmudar (2012) Green chemistry: A tool in Pharmaceutical Chemistry. Retrieved from  http://www.nhlmmc.edu.in/document/volume1.issue1/7-13.pdf
4.       Basics of Green Chemistry (2014) Retrieved from http://www2.epa.gov/green-chemistry/basics-green-chemistry#definition

THE IMPORTANCE OF SYMMETRY OPERATIONS IN THE UNDERSTANDING OF CHEMICAL PROPERTIES AND CHEMICAL REACTIONS

1.1       INTRODUCTION
We will already be familiar with the concept of symmetry in an everyday sense. If we say something is ‘symmetrical’, we usually mean it has mirror symmetry, or ‘left-right’ symmetry, and would look the same if viewed in a mirror. Symmetry is also very important in chemistry. Some molecules are clearly ‘more symmetrical’ than others, but what consequences does this have, if any? The aim of this course is to provide a systematic treatment of symmetry in chemical systems within the mathematical framework known as group theory. Once we have classified the symmetry of a molecule, group theory provides a powerful set of tools that provide us with considerable insight into many of its chemical and physical properties.
Symmetry (from Greek συμμετρία symmetria "agreement in dimensions, due proportion, arrangement") in everyday language refers to a sense of harmonious and beautiful proportion and balance. In mathematics, "symmetry" has a more precise definition, that an object is invariant to a transformation, such as reflection but including other transforms too. Although these two meanings of "symmetry" can sometimes be told apart, they are related, so they are here discussed together.
Mathematical symmetry may be observed with respect to the passage of time; as a spatial relationship; through geometric transformations such as scalingreflection, and rotation; through other kinds of functional transformations; and as an aspect of abstract objectstheoretic models, languagemusic and even knowledge itself.
This article describes symmetry from four perspectives: in geometry, the most familiar type of symmetry for many people; more generally, in mathematics as a whole; as it relates to science and nature; and in the arts, covering architectureart and music.
The opposite of symmetry is asymmetry.
In chemistry, a property manifested in the geometrical configuration of molecules and affecting the physical and chemical properties of molecules in the isolated state, in an external field, and in interactions with other atoms and molecules.
Most simple molecules possess such elements of spatial symmetry in the equilibrium configuration as axes of symmetry and symmetry planes. Thus, a molecule of ammonia (NH3) possesses the symmetry of a regular triangular pyramid, while a molecule of methane (CH4) possesses the symmetry of a tetrahedron. In complex molecules, symmetry of the equilibrium configuration of the molecule as a whole is usually absent although to a great extent the symmetry of the individual molecular fragments (local symmetry) is preserved. The most complete description of symmetry of both equilibrium and non-equilibrium configurations of molecules is obtained from the concept of dynamic symmetry groups, that is, groups that include not only operations of spatial symmetry of the nuclear configuration but also operations involving the transposition of identical nuclei in various configurations. For example, the dynamic symmetry group for the NH3 molecule also includes the operation of inversion of this molecule: the transfer of the N atom from one side of the plane formed by the H atoms to the other.
The symmetry of the equilibrium configuration of the nuclei in a molecule determines the symmetry of the wave functions for various states of the molecule. This relationship permits a classification of states according to symmetry types. The transition between two states is related to the absorption or emission of light; depending on the symmetry types of the states, the transition either will be seen in the molecular spectrum or else will be forbidden, in which case the line or band corresponding to this transition will be absent in the spectrum. The symmetry types of states between which transitions are possible affect both the intensity and the polarization of spectral lines and bands. For example, in homo-nuclear diatomic molecules, transitions between electronic states of identical parity, the electronic wave functions of which behave identically upon inversion, are forbidden and do not appear in the spectra. Also, in molecules of benzene and analogous compounds, transitions between non degenerate electronic states of the same symmetry type are also forbidden. The rules for selection according to symmetry are complemented for transitions between different states by selection rules related to the spin of these states.
In molecules with paramagnetic centres, the symmetry of the environment of these centres leads to a given type of anisotropy of the g-factor (Landé splitting factor); this anisotropy affects the structure of the electron paramagnetic resonance spectrum. In molecules with nuclei possessing nonzero spin, the symmetry of the individual local fragments leads to a distinct type of splitting of the energy states with different projections of nuclear spin; this splitting affects the structure of nuclear magnetic resonance spectrum.
In the approximate methods of quantum chemistry, which make use of the concept of molecular orbitals, classification according to symmetry is possible not only for the wave function of the molecule as a whole but also for the individual orbitals. If the equilibrium configuration of a molecule has a symmetry plane containing nuclei, all the orbitals of the molecule will fall into one of two classes, being either symmetrical (σ)or anti-symmetrical (π) relative to the operation of reflection in this plane. Molecules in which m orbitals are the highest (with respect to energy), occupied orbitals form specific classes of unsaturated and conjugated compounds with characteristic properties. Knowledge of the local symmetry of the individual fragments of a molecule and of the molecular orbitals localized on these fragments permits an evaluation of which fragments will more readily undergo excitation and will be more strongly altered in the course of chemical transformations, for example  in photochemical reactions.
Symmetry concepts have great importance in the theoretical analysis of the structure, properties, and behaviour in various reactions of complex compounds. Crystal field theory and ligand field theory postulate a mutual arrangement of the occupied and vacant orbitals of a complex compound on the basis of data on the compound’s symmetry. The theories also postulate the nature and degree of the splitting of energy levels upon a change in the symmetry of the ligand field. Knowledge of only the symmetry of a complex very often permits a qualitative evaluation of the complex’s properties.
In 1965, R. Woodward and R. Hoffmann proposed the principle of conservation of orbital symmetry in chemical reactions. The principle has been confirmed by experiment and has had a great impact on the development of the branch of organic chemistry dealing with the preparation of substances. Known as the Woodward-Hoffmann rule, it states that the individual steps of a chemical reaction proceed with the conservation of the symmetry of the molecular orbitals, or orbital symmetry. The greater the violation of orbital symmetry in a particular step, the more difficult it is for the reaction to proceed.
Consideration of the symmetry of molecules is important in selecting the materials used in producing chemical lasers and molecular rectifiers, building models of organic superconductors, and analysing carcinogenic and pharmacologically active substances.



2.1       IMPORTANCE OF SYMMETRY OPERATIONS IN CHEMICAL PROPERTIES AND CHEMICAL REACTIONS
Symmetry is important to chemistry because it undergirds essentially all specific interactions between molecules in nature (i.e., via the interaction of natural and human-made chiral molecules with inherently chiral biological systems). The control of the symmetry of molecules produced in modern chemical synthesis contributes to the ability of scientists to offer therapeutic interventions with minimal side effects. A rigorous understanding of symmetry explains fundamental observations in quantum chemistry, and in the applied areas of spectroscopy and crystallography. The theory and application of symmetry to these areas of physical science draws heavily on the mathematical area of group theory. This is the reason why symmetry operations and symmetry elements in a molecule are important to the inorganic chemistry.

2.1.1    Constructing Molecular and Hybrid Orbitals
In chemistry, a molecular orbital (or MO) is a mathematical function describing the wave-like behaviour of an electron in a molecule. This function can be used to calculate chemical and physical properties such as the probability of finding an electron in any specific region. The term orbital was introduced by Robert S. Mulliken in 1932 as an abbreviation for one-electron orbital wave function.[1] At an elementary level it is used to describe the region of space in which the function has a significant amplitude. Molecular orbitals are usually constructed by combining atomic orbitals or hybrid orbitals from each atom of the molecule, or other molecular orbitals from groups of atoms. They can be quantitatively calculated using the Hartree–Fock or self-consistent field (SCF) methods.
A molecular orbital (MO) can be used to represent the regions in a molecule where an electron occupying that orbital is likely to be found. Molecular orbitals are obtained from the combination of atomic orbitals, which predict the location of an electron in an atom. A molecular orbital can specify the electron configuration of a molecule: the spatial distribution and energy of one (or one pair of) electron(s). Most commonly an MO is represented as a linear combination of atomic orbitals (the LCAO-MO method), especially in qualitative or very approximate usage. They are invaluable in providing a simple model of bonding in molecules, understood through molecular orbital theory. Most present-day methods in computational chemistry begin by calculating the MOs of the system. A molecular orbital describes the behaviour of one electron in the electric field generated by the nuclei and some average distribution of the other electrons. In the case of two electrons occupying the same orbital, the Pauli principle demands that they have opposite spin. Necessarily this is an approximation, and highly accurate descriptions of the molecular electronic wave function do not have orbitals.
Molecular orbitals arise from allowed interactions between atomic orbitals, which are allowed if the symmetries (determined from group theory) of the atomic orbitals are compatible with each other. Efficiency of atomic orbital interactions is determined from the overlap (a measure of how well two orbitals constructively interact with one another) between two atomic orbitals, which is significant if the atomic orbitals are close in energy. Finally, the number of molecular orbitals that form must equal the number of atomic orbitals in the atoms being combined to form the molecule.
Molecular orbitals were first introduced by Friedrich Hund and Robert S. Mulliken in 1927 and 1928. The linear combination of atomic orbitals or "LCAO" approximation for molecular orbitals was introduced in 1929 by Sir John Lennard-Jones.[8] His ground-breaking paper showed how to derive the electronic structure of the fluorine and oxygen molecules from quantum principles. This qualitative approach to molecular orbital theory is part of the start of modern quantum chemistry. Linear combinations of atomic orbitals (LCAO) can be used to estimate the molecular orbitals that are formed upon bonding between the molecule's constituent atoms. Similar to an atomic orbital, a Schrödinger equation, which describes the behaviour of an electron, can be constructed for a molecular orbital as well. Linear combinations of atomic orbitals, or the sums and differences of the atomic wave functions, provide approximate solutions to the Hartree–Fock equations which correspond to the independent-particle approximation of the molecular Schrödinger equation. As the two atoms become closer together, their atomic orbitals overlap to produce areas of high electron density, and, as a consequence, molecular orbitals are formed between the two atoms. The atoms are held together by the electrostatic attraction between the positively charged nuclei and the negatively charged electrons occupying bonding molecular orbitals.
A MO with σ symmetry results from the interaction of either two atomic s-orbitals or two atomic pz-orbitals. An MO will have σ-symmetry if the orbital is symmetrical with respect to the axis joining the two nuclear centres, the inter-nuclear axis. This means that rotation of the MO about the inter-nuclear axis does not result in a phase change. A σ* orbital, sigma anti-bonding orbital, also maintains the same phase when rotated about the inter-nuclear axis. The σ* orbital has a nodal plane that is between the nuclei and perpendicular to the inter-nuclear axis.

2.1.2    Interpreting  Spectroscopic
2.1.2.1 Vibrational Spectroscopy
Infrared (IR) and Raman spectroscopies are branches of vibrational spectroscopy and the former technique is much the more widely available of the two in student teaching laboratories.  Vibrational spectroscopy is concerned with the observation of the degrees of vibrational freedom, the number  of which can be determined as follows. the motion of the molecule containing n atoms can conveniently be described in terms of three Cartesian axes, the molecule has 3n degrees of freedom which together describe the translational, vibrational and rotational motions of the molecule.

2.1.2.2 Raman Spectroscopy
Chandrasekhara V. Raman was awarded the 1930 Nobel Prize in Physics ‘for his work on the scattering of light and for the discovery of the effect named after him’. When radiation usually from the laser of a particular frequency, v0, falls on a vibrating molecule, most of the radiation is scattered without change in frequency. This is called Rayleigh scattering. One of the advantages of Raman spectroscopy is that is extends to lower wave numbers than routine laboratory IR spectroscopy, thereby permitting the observation of, for example, metal-ligand vibrational modes. A disadvantage of the Raman effect is its insentivity since only a tiny percentage of the scattered radiation undergoes Raman scattering. one way of overcoming this is to use a Fourier transform (FT technique). A second way, suitable only for coloured compound, is used to resonance Raman spectroscopy. This technique realise on using laser excitation wavelength that co-inside with wavelengths of absorbtion in the electronic spectrum of a compound. This leads to resonance enhancement and increase in the intensity of lines in the Raman spectrum. Resonance Raman spectroscopy is now used extensively for the investigation of coloured d-block metal complexes and for probing the active metals side in metalloproteins.

2.1.2.3 Predict Whether a Given Molecule is Chiral
One example of symmetry in chemistry that you will already have come across is found in the isomeric pairs of molecules called enantiomers. Enantiomers are non-superimposable mirror images of each other, and one consequence of this symmetrical relationship is that they rotate the plane of polarized light passing through them in opposite directions. Such molecules are said to be chiral, meaning that they cannot be superimposed on their mirror image. Formally, the symmetry element that precludes a molecule from being chiral is a rotation-reflection axis. Chiral molecule can rotate the plane of plane-polarized light. This property is known as optical activity and the two mirror images are known as optical isomers or enantiomers.
The importance of chirality is clearly seen in, for example, dramatic differences in the activities of different enantiomers of chiral drugs. A helical chain is easy to recognize, but it is not always search a fasile task to identify a chiral compound by attempting to convince oneself that it is, or is not, non-superposable on its mirror image. symmetry consideration come to our aid; a chiral molecular species must lack an improper (Sn) axis of symmetry.
Another commonly used criterion of an inversion centre, i, and plane of symmetry, σ. However, both of this properties are compatible with the criterion given above, since we can rewrite the symmetry operation i and σ in terms of the improper rotation S2 and S1 respectively.

3.1       SUMMARY

Symmetry is a property of molecules having more than one atom of the same kind, with equal bond lengths and/or bond angles. As like the high symmetry of the SF6 molecule arises from the six equal S-F bonds disposed at angles of 90° to each other. In order to build the notion more precise we use the idea of a symmetry operation. For example rotating SF6 by 90° about an appropriate axis, it appears indistinguishable after the rotation. The axis concerned is known as the symmetry element. Rotations which do not leave the molecule looking the similar are not symmetry operations.


Wednesday, 8 October 2014

ASSALAMUALAIKUM, Salam 1UPSI dan Salam Perak Aman Jaya.

Selamat Datang!
Blog ini diwujudkan sebagai ruang pembelajaran bagi subjek Information and Communication Technology (ICT) in Chemistry, SKI3013 bagi program Ijazah Sarjana Muda Pendidikan (ISMP) Kimia semester 1 2014/2015 Universiti Pendidikan Sultan Idris.